Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator beti | shim_19090 | Not Available | Negative | 1900887 - 1901561 | 24756.6 |
| phenylacetone monooxygenase | shim_19100 | Q5REK0 | Positive | 1901625 - 1902944 | 48789.0 |
| sodium bile acid symporter family protein | shim_19110 | O34524 | Positive | 1902941 - 1903858 | 32106.2 |
| 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase | shim_19120 | Not Available | Positive | 1903855 - 1904793 | 33417.1 |
| putative oxidoreductase sadh | shim_19130 | Q9Y140 | Positive | 1904790 - 1905548 | 26552.9 |
| Trna-pseudo | Not Available | Not Available | Positive | 1905654 - 1905737 | Not Available |
| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb | shim_19150 | Q8Y016 | Positive | 1905784 - 1906653 | 31367.4 |
| hypothetical protein | shim_19160 | Not Available | Positive | 1906752 - 1907006 | 9278.54 |
| hypothetical protein | shim_19170 | P75874 | Positive | 1907122 - 1907589 | 17054.9 |
| sensory/regulatory protein rpfc | shim_19180 | Not Available | Negative | 1907523 - 1909334 | 65792.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
