Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione-regulated potassium-efflux system protein kefc | shim_18990 | Q3Z5W2 | Negative | 1888745 - 1890628 | 67885.0 |
| leucine-responsive regulatory protein | shim_19000 | O07920 | Negative | 1890645 - 1891100 | 16777.1 |
| 4-hydroxyphenylpyruvate dioxygenase | shim_19010 | Q9I576 | Positive | 1891249 - 1892346 | 41145.2 |
| hypothetical protein | shim_19020 | Not Available | Negative | 1892424 - 1893359 | 33900.5 |
| haloalkane dehalogenase | shim_19030 | D4Z2G1 | Positive | 1893540 - 1894415 | 32402.4 |
| hypothetical protein | shim_19040 | Not Available | Negative | 1894493 - 1896967 | 86278.8 |
| 26 kda periplasmic immunogenic protein precursor | shim_19050 | Not Available | Positive | 1897133 - 1897822 | 23862.7 |
| methionine gamma-lyase | shim_19060 | O13326 | Negative | 1897892 - 1899184 | 45739.1 |
| hypothetical protein | shim_19070 | Not Available | Negative | 1899339 - 1900343 | 38506.8 |
| hypothetical protein | shim_19080 | Not Available | Positive | 1900444 - 1900890 | 16163.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
