Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipase ytpa | shim_18890 | Not Available | Negative | 1879591 - 1880529 | 34443.0 |
| scp-2 sterol transfer family protein | shim_18900 | Not Available | Negative | 1880529 - 1880819 | 9581.33 |
| tetratricopeptide repeat protein | shim_18910 | Not Available | Positive | 1881013 - 1881471 | 17026.2 |
| hypothetical protein | shim_18920 | O94445 | Positive | 1881495 - 1884371 | 105101.0 |
| heat shock protein 15 | shim_18930 | P0ACH0 | Positive | 1884376 - 1884795 | 15409.5 |
| ferredoxin-2 | shim_18940 | P0CY91 | Positive | 1884846 - 1885184 | 12725.8 |
| rna polymerase-binding transcription factor card | shim_18950 | A0R561 | Positive | 1885464 - 1885982 | 19123.8 |
| voltage-gated potassium channel | shim_18960 | Not Available | Positive | 1886084 - 1886854 | 28845.4 |
| cobalamin synthase | shim_18970 | A8ID91 | Negative | 1886858 - 1887622 | 26255.7 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | shim_18980 | Q5LTJ1 | Positive | 1887700 - 1888710 | 33530.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
