Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptidase i | shim_01570 | Q8L2J7 | Positive | 143050 - 143886 | 31161.3 |
| ribonuclease 3 | shim_01580 | Q5LNK5 | Positive | 143883 - 144566 | 24712.6 |
| succinoglycan biosynthesis protein exoi | shim_01590 | Not Available | Negative | 144571 - 145131 | 20447.9 |
| gtpase era | shim_01600 | A8LLE0 | Positive | 145301 - 146209 | 33774.9 |
| hypothetical protein | shim_01610 | Not Available | Positive | 146212 - 146541 | 12159.3 |
| dna repair protein reco | shim_01620 | Q5LNK7 | Positive | 146627 - 147358 | 27163.7 |
| hypothetical protein | shim_01630 | Not Available | Negative | 147333 - 147743 | 14823.7 |
| hypothetical protein | shim_01640 | Not Available | Negative | 147746 - 148297 | 19588.5 |
| acyl-coa dehydrogenase | shim_01650 | D3JV03 | Negative | 148566 - 150254 | 61520.9 |
| sulfite exporter taue/safe | shim_01660 | Not Available | Positive | 150397 - 151164 | 26672.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
