Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hydrolase yxep | shim_18790 | Not Available | Positive | 1866924 - 1868090 | 41832.6 |
| autoinducer 2 sensor kinase/phosphatase luxq | shim_18800 | Not Available | Negative | 1868148 - 1870604 | 89456.9 |
| cyclic pyranopterin monophosphate synthase | shim_18810 | A8LIR8 | Negative | 1870747 - 1871751 | 37801.3 |
| hypothetical protein | shim_18820 | Not Available | Positive | 1871823 - 1872269 | 15258.5 |
| dna alkylation repair enzyme | shim_18830 | Not Available | Negative | 1872274 - 1872951 | 25599.5 |
| glutamine--fructose-6-phosphate aminotransferase (isomerizing) | shim_18840 | Q577Y1 | Negative | 1872948 - 1874771 | 65186.7 |
| bifunctional protein glmu | shim_18850 | Q1GIQ5 | Negative | 1874771 - 1876129 | 47954.4 |
| phosphoglycolate phosphatase, chromosomal | shim_18860 | Q98ML8 | Positive | 1876264 - 1876935 | 23499.1 |
| mmge/prpd family protein | shim_18870 | Not Available | Negative | 1876884 - 1878218 | 47376.9 |
| udp-2-acetamido-2-deoxy-3-oxo-d-glucuronate aminotransferase | shim_18880 | P25048 | Positive | 1878382 - 1879590 | 43313.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
