Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_18690 | Not Available | Negative | 1854053 - 1854235 | 6815.83 |
| transcriptional regulator hila | shim_18700 | Not Available | Positive | 1854356 - 1855879 | 56473.6 |
| glutathione transport system permease protein gsid | shim_18710 | P42063 | Negative | 1856051 - 1856962 | 33247.1 |
| glutathione transport system permease protein gsic | shim_18720 | P42062 | Negative | 1856955 - 1857962 | 38001.5 |
| oligopeptide-binding protein appa precursor | shim_18730 | P06109 | Negative | 1858082 - 1859782 | 61131.9 |
| glutathione import atp-binding protein gsia | shim_18740 | Q6D3A9 | Positive | 1860078 - 1861898 | 67300.6 |
| acetylornithine deacetylase | shim_18750 | Not Available | Positive | 1861902 - 1863068 | 42028.0 |
| sarcosine oxidase subunit beta | shim_18760 | Q88Q83 | Positive | 1863065 - 1864411 | 47626.9 |
| putative hydrolase yxep | shim_18770 | Not Available | Positive | 1864525 - 1865700 | 42354.2 |
| putative hydrolase yxep | shim_18780 | P45493 | Positive | 1865735 - 1866898 | 41437.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
