Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_18490 | Not Available | Negative | 1830610 - 1830816 | 7299.81 |
| hth-type transcriptional regulator virs | shim_18500 | P9WMJ0 | Negative | 1831016 - 1832101 | 40904.7 |
| adenylate cyclase 1 | shim_18510 | Not Available | Negative | 1832141 - 1833691 | 57206.1 |
| chaperone protein dnaj | shim_18520 | Not Available | Negative | 1833760 - 1834383 | 23888.9 |
| hypothetical protein | shim_18530 | Not Available | Negative | 1834592 - 1835083 | 17477.3 |
| l-carnitine dehydrogenase | shim_18540 | Not Available | Negative | 1835154 - 1835636 | 18345.8 |
| adenylate and guanylate cyclase catalytic domain protein | shim_18550 | Not Available | Positive | 1835872 - 1836861 | 35946.5 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | shim_18560 | Q5LPK1 | Negative | 1836958 - 1838469 | 55777.5 |
| hypothetical protein | shim_18570 | Not Available | Negative | 1838566 - 1839870 | 48894.7 |
| hypothetical protein | shim_18580 | Not Available | Negative | 1839985 - 1840413 | 15764.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
