Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol kinase | shim_18390 | Q165D5 | Positive | 1820755 - 1822245 | 53404.4 |
| hypothetical protein | shim_18400 | Not Available | Positive | 1822273 - 1822788 | 18144.6 |
| d-tyrosyl-trna(tyr) deacylase | shim_18410 | Q5LP58 | Negative | 1822810 - 1823247 | 15193.2 |
| aerobic cobaltochelatase subunit cobt | shim_18420 | P29934 | Negative | 1823247 - 1825121 | 69427.2 |
| inner membrane protein yiaw | shim_18430 | Not Available | Positive | 1825276 - 1825785 | 18471.6 |
| inner membrane protein yibh | shim_18440 | P0AFV1 | Positive | 1825782 - 1826909 | 40384.3 |
| aerobic cobaltochelatase subunit cobs | shim_18450 | P29933 | Negative | 1826984 - 1827970 | 36760.6 |
| ribonuclease bn | shim_18460 | Not Available | Positive | 1828225 - 1829289 | 36975.4 |
| peptide methionine sulfoxide reductase msrb | shim_18470 | Q3SJU1 | Positive | 1829399 - 1829866 | 17493.9 |
| transcriptional regulatory protein baer | shim_18480 | Not Available | Negative | 1829903 - 1830610 | 26280.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
