Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,2-phenylacetyl-coa epoxidase, subunit e | shim_18190 | P76081 | Negative | 1800981 - 1802051 | 38801.1 |
| putative 1,2-phenylacetyl-coa epoxidase, subunit d | shim_18200 | P76080 | Negative | 1802063 - 1802647 | 20811.7 |
| 1,2-phenylacetyl-coa epoxidase, subunit c | shim_18210 | P76079 | Negative | 1802611 - 1803378 | 28087.3 |
| 1,2-phenylacetyl-coa epoxidase, subunit b | shim_18220 | P76078 | Negative | 1803378 - 1803662 | 10742.6 |
| 1,2-phenylacetyl-coa epoxidase, subunit a | shim_18230 | P76077 | Negative | 1803674 - 1804651 | 36930.8 |
| 3-oxoadipyl-coa/3-oxo-5,6-dehydrosuberyl-coa thiolase | shim_18240 | Q9I6R0 | Negative | 1804679 - 1805884 | 41343.5 |
| nad(p)h-quinone oxidoreductase subunit i, chloroplastic | shim_18250 | Not Available | Positive | 1806256 - 1806936 | 23677.9 |
| assembly protein for periplasmic nitrate reductase | shim_18260 | Not Available | Positive | 1806893 - 1807156 | 9263.96 |
| periplasmic nitrate reductase precursor | shim_18270 | A8LLY9 | Positive | 1807169 - 1809658 | 92702.5 |
| quinol dehydrogenase periplasmic component | shim_18280 | P44652 | Positive | 1809698 - 1810537 | 29657.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
