Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xdhc and coxi family protein | shim_18090 | Not Available | Positive | 1790010 - 1790828 | 27970.0 |
| hypothetical protein | shim_18100 | Not Available | Negative | 1790901 - 1791305 | 14551.5 |
| crotonyl-coa reductase | shim_18110 | A4YGN2 | Negative | 1791302 - 1792384 | 37839.0 |
| selenide, water dikinase | shim_18120 | Q63NL2 | Positive | 1792560 - 1794740 | 74518.6 |
| trna 2-selenouridine synthase | shim_18130 | A4SMM2 | Negative | 1794724 - 1795764 | 37795.1 |
| bifunctional protein paaz | shim_18140 | P77455 | Negative | 1795885 - 1797915 | 72033.9 |
| acyl-coenzyme a thioesterase paai | shim_18150 | P76084 | Positive | 1798011 - 1798445 | 15496.1 |
| phenylacetate-coenzyme a ligase | shim_18160 | Q9L9C1 | Positive | 1798473 - 1799783 | 48104.6 |
| hth-type transcriptional repressor nics | shim_18170 | Not Available | Positive | 1799787 - 1800383 | 22595.0 |
| hypothetical protein | shim_18180 | Not Available | Positive | 1800613 - 1800972 | 12242.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
