Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator pled | shim_17990 | Q9A5I5 | Negative | 1777341 - 1778756 | 51110.5 |
| hypothetical protein | shim_18000 | Not Available | Positive | 1778838 - 1779122 | 10156.1 |
| phosphoglycolate phosphatase | shim_18010 | Not Available | Positive | 1779213 - 1779902 | 23923.1 |
| trimethylamine methyltransferase (mttb) | shim_18020 | Not Available | Positive | 1780095 - 1781681 | 58315.2 |
| hypothetical protein | shim_18030 | P45804 | Positive | 1781750 - 1783465 | 62078.7 |
| heme no binding protein | shim_18040 | Not Available | Positive | 1783530 - 1784117 | 21872.2 |
| putative diguanylate cyclase yedq | shim_18050 | Q8Z5R0 | Positive | 1784127 - 1785131 | 36299.1 |
| hth-type transcriptional regulator dmlr | shim_18060 | P52689 | Negative | 1785128 - 1786030 | 33546.5 |
| carbon monoxide dehydrogenase small chain | shim_18070 | P10351 | Positive | 1786232 - 1787701 | 52791.3 |
| aldehyde oxidoreductase | shim_18080 | Q54FB7 | Positive | 1787701 - 1790013 | 83716.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
