Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_17890 | Not Available | Positive | 1771592 - 1771798 | 7142.99 |
| fatty acid desaturase | shim_17900 | Not Available | Positive | 1771791 - 1772696 | 34791.5 |
| eama-like transporter family protein | shim_17910 | Not Available | Positive | 1772763 - 1773665 | 31285.2 |
| nudix domain protein | shim_17920 | Not Available | Negative | 1773662 - 1774378 | 26191.0 |
| hypothetical protein | shim_17930 | Not Available | Negative | 1774418 - 1774699 | 10693.5 |
| hypothetical protein | shim_17940 | Not Available | Positive | 1774893 - 1775120 | 8478.24 |
| transaldolase/ef-hand domain-containing protein | shim_17950 | Not Available | Positive | 1775110 - 1775724 | 22226.2 |
| ecf rna polymerase sigma factor sigw | shim_17960 | Not Available | Positive | 1775815 - 1776393 | 20900.9 |
| hypothetical protein | shim_17970 | Not Available | Positive | 1776368 - 1776781 | 13987.8 |
| hypothetical protein | shim_17980 | Not Available | Positive | 1776817 - 1777317 | 18399.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
