Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| precorrin-6a reductase | shim_17690 | O68098 | Positive | 1753282 - 1754013 | 25902.4 |
| precorrin-3b c(17)-methyltransferase | shim_17700 | P21640 | Negative | 1754037 - 1754789 | 27031.6 |
| precorrin-2 c(20)-methyltransferase | shim_17710 | P21639 | Negative | 1754786 - 1755517 | 26767.2 |
| precorrin-8x methylmutase | shim_17720 | Q9HZU2 | Negative | 1755514 - 1756143 | 22427.0 |
| ferredoxin-nitrite reductase | shim_17730 | P21637 | Negative | 1756143 - 1757276 | 40067.9 |
| aerobic cobaltochelatase subunit cobn | shim_17740 | P29929 | Negative | 1757273 - 1760560 | 118109.0 |
| putative gtp-binding protein yjia | shim_17750 | P29937 | Negative | 1760567 - 1761604 | 37137.4 |
| hypothetical protein | shim_17760 | Not Available | Negative | 1761601 - 1761984 | 13627.9 |
| hypothetical protein | shim_17770 | Not Available | Negative | 1761977 - 1762228 | 9222.76 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | shim_17780 | P29930 | Positive | 1762319 - 1762936 | 23206.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
