Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane transport protein ydhc | shim_17490 | P32482 | Negative | 1733239 - 1734438 | 42179.5 |
| putative assembly protein | shim_17500 | Not Available | Negative | 1734448 - 1736355 | 65835.0 |
| hypothetical protein | shim_17510 | Not Available | Negative | 1736456 - 1736620 | 6150.76 |
| glyceraldehyde-3-phosphate dehydrogenase | shim_17520 | P29272 | Negative | 1736688 - 1737686 | 35758.6 |
| hypothetical protein | shim_17530 | Not Available | Positive | 1738251 - 1738589 | 11798.1 |
| isoquinoline 1-oxidoreductase subunit alpha | shim_17540 | Q51697 | Positive | 1739085 - 1739543 | 16235.3 |
| isoquinoline 1-oxidoreductase subunit beta | shim_17550 | Not Available | Positive | 1739547 - 1741787 | 80184.0 |
| 1,2-epoxyphenylacetyl-coa isomerase | shim_17560 | P77467 | Negative | 1741847 - 1742611 | 26945.3 |
| phosphate regulon transcriptional regulatory protein phob | shim_17570 | A0QTK2 | Positive | 1742814 - 1743200 | 13931.1 |
| hpt domain protein | shim_17580 | Not Available | Negative | 1743206 - 1743544 | 12604.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
