Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gscfa family protein | shim_17390 | Not Available | Positive | 1725322 - 1726392 | 39774.4 |
| hypothetical protein | shim_17400 | Not Available | Positive | 1726389 - 1727150 | 28337.6 |
| zinc-responsive transcriptional regulator | shim_17410 | Not Available | Negative | 1727175 - 1727549 | 14876.9 |
| hypothetical protein | shim_17420 | Not Available | Positive | 1727667 - 1728089 | 14798.6 |
| hypothetical protein | shim_17430 | Not Available | Positive | 1728091 - 1728600 | 19002.6 |
| dna-damage-inducible protein f | shim_17440 | P28303 | Positive | 1728593 - 1729927 | 47270.0 |
| inner membrane transport permease yadh | shim_17450 | Not Available | Negative | 1729917 - 1730717 | 28363.7 |
| gcra cell cycle regulator | shim_17460 | Not Available | Positive | 1730854 - 1731447 | 21114.6 |
| hypothetical protein | shim_17470 | Not Available | Positive | 1731490 - 1732272 | 28956.9 |
| t-protein | shim_17480 | Not Available | Negative | 1732281 - 1733042 | 27510.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
