Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain-fatty-acid--coa ligase | shim_17290 | Q8VZF1 | Negative | 1714922 - 1716553 | 59076.7 |
| hypothetical protein | shim_17300 | Not Available | Positive | 1716912 - 1717550 | 23155.7 |
| hypothetical protein | shim_17310 | Not Available | Positive | 1717719 - 1717967 | 9209.06 |
| fatty acid oxidation complex subunit alpha | shim_17320 | A3QFP3 | Negative | 1718077 - 1720275 | 79028.6 |
| putative acyltransferase | shim_17330 | O53871 | Negative | 1720300 - 1721511 | 42789.3 |
| hypothetical protein | shim_17340 | Not Available | Negative | 1721522 - 1721815 | 10475.3 |
| disulfide-bond oxidoreductase yfcg | shim_17350 | A0A6J4B5J2 | Negative | 1721820 - 1722458 | 24225.4 |
| hypothetical protein | shim_17360 | Not Available | Negative | 1722496 - 1722708 | 8255.78 |
| acyl-coa dehydrogenase | shim_17370 | Not Available | Negative | 1722768 - 1724543 | 63738.1 |
| hth-type transcriptional regulator zntr | shim_17380 | Not Available | Negative | 1724561 - 1724962 | 16053.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
