Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_17190 | Not Available | Positive | 1702959 - 1704194 | 47163.5 |
| nad-dependent malic enzyme | shim_17200 | Not Available | Negative | 1704269 - 1706548 | 82323.2 |
| cupin domain protein | shim_17210 | Not Available | Positive | 1706695 - 1707789 | 40643.9 |
| cytidine deaminase | shim_17220 | Q9S3M0 | Positive | 1707786 - 1708205 | 14482.1 |
| thymidine phosphorylase | shim_17230 | A0KPE3 | Positive | 1708221 - 1709525 | 44346.2 |
| phosphopentomutase | shim_17240 | A4YPV1 | Positive | 1709525 - 1710733 | 42541.2 |
| aminodeoxyfutalosine deaminase | shim_17250 | B5ZXI3 | Positive | 1710730 - 1711716 | 35416.6 |
| uracil phosphoribosyltransferase | shim_17260 | A1B467 | Positive | 1711716 - 1712345 | 22954.1 |
| sporulation related domain protein | shim_17270 | Not Available | Positive | 1712423 - 1713760 | 47366.2 |
| hypothetical protein | shim_17280 | Not Available | Negative | 1713808 - 1714815 | 36360.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
