Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannitol 2-dehydrogenase | shim_17090 | P33216 | Negative | 1689943 - 1691466 | 55352.8 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | shim_17100 | Not Available | Negative | 1691512 - 1692516 | 36389.8 |
| trehalose transport system permease protein sugb | shim_17110 | P9WG00 | Negative | 1692526 - 1693359 | 30939.5 |
| inner membrane abc transporter permease protein ycjo | shim_17120 | Not Available | Negative | 1693371 - 1694309 | 34719.3 |
| bacterial extracellular solute-binding protein | shim_17130 | Q9I1E0 | Negative | 1694462 - 1695745 | 44857.1 |
| ribose operon repressor | shim_17140 | O05103 | Negative | 1695862 - 1696893 | 38067.4 |
| hypothetical protein | shim_17150 | Not Available | Positive | 1697526 - 1697834 | 11443.5 |
| 3-deoxy-d-manno-octulosonic acid transferase | shim_17160 | Q4UND5 | Positive | 1697834 - 1699138 | 47817.8 |
| 3-deoxy-d-manno-octulosonic acid transferase | shim_17170 | Q45374 | Positive | 1699135 - 1700460 | 49208.9 |
| acetyl-coenzyme a synthetase | shim_17180 | P28812 | Negative | 1700776 - 1702668 | 68556.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
