Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional repressor puur | shim_16890 | Not Available | Negative | 1666368 - 1666823 | 16408.5 |
| hypothetical protein | shim_16900 | Not Available | Negative | 1666914 - 1667378 | 17487.3 |
| ribonucleoside-diphosphate reductase nrdz | shim_16910 | P9WH76 | Positive | 1667535 - 1669817 | 83483.6 |
| lipase (class 3) | shim_16920 | Not Available | Positive | 1670544 - 1671548 | 36633.1 |
| catalase-related peroxidase | shim_16930 | P17336 | Positive | 1671691 - 1672734 | 38739.9 |
| hypothetical protein | shim_16940 | Not Available | Positive | 1672731 - 1673447 | 26710.0 |
| hypothetical protein | shim_16950 | Not Available | Positive | 1673447 - 1674853 | 51837.1 |
| adenylate cyclase 2 | shim_16960 | Q52999 | Negative | 1674850 - 1678008 | 115173.0 |
| gluconolactonase precursor | shim_16970 | Not Available | Negative | 1678168 - 1679145 | 34753.4 |
| 3-keto-5-aminohexanoate cleavage enzyme | shim_16980 | Not Available | Negative | 1679872 - 1680807 | 34235.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
