Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cystathionine beta-lyase patb | shim_01370 | Q08432 | Negative | 128501 - 129673 | 43093.3 |
| peptide deformylase | shim_01380 | Q13F18 | Positive | 129766 - 130287 | 19506.8 |
| peptide deformylase | shim_01390 | Q92SH6 | Positive | 130284 - 130775 | 17874.4 |
| peptide deformylase | shim_01400 | Q6NC51 | Positive | 130772 - 131266 | 18495.4 |
| methionyl-trna formyltransferase | shim_01410 | Q1GDF7 | Positive | 131290 - 132195 | 31843.3 |
| hypothetical protein | shim_01420 | Not Available | Positive | 132206 - 132442 | 8406.53 |
| hypothetical protein | shim_01430 | Not Available | Positive | 132578 - 133606 | 38861.3 |
| ribonuclease hi | shim_01440 | Q1GDG1 | Negative | 133655 - 134113 | 16688.7 |
| trans-aconitate 2-methyltransferase | shim_01450 | Not Available | Negative | 134106 - 134711 | 21581.4 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | shim_01460 | Q5LNJ7 | Negative | 134773 - 135726 | 34417.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
