Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| low-molecular weight cobalt-containing nitrile hydratase subunit beta | shim_16790 | Not Available | Positive | 1657130 - 1657798 | 23547.6 |
| nitrile hydratase beta subunit | shim_16800 | Not Available | Positive | 1657795 - 1658115 | 11840.0 |
| hypothetical protein | shim_16810 | Not Available | Negative | 1658190 - 1658387 | 7233.98 |
| adenylosuccinate synthetase | shim_16820 | Q1GF65 | Positive | 1658748 - 1660061 | 47153.3 |
| hypothetical protein | shim_16830 | Not Available | Positive | 1660101 - 1660337 | 8564.7 |
| hypothetical protein | shim_16840 | Not Available | Negative | 1660380 - 1661291 | 32425.0 |
| hemolysin-activating lysine-acyltransferase hlyc | shim_16850 | Not Available | Negative | 1661292 - 1661792 | 18374.9 |
| hypothetical protein | shim_16860 | Not Available | Negative | 1661958 - 1664450 | 88965.9 |
| thiamine pyrophosphokinase | shim_16870 | Not Available | Positive | 1664590 - 1665270 | 23821.9 |
| riboflavin transporter | shim_16880 | Not Available | Negative | 1665227 - 1666150 | 33308.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
