Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phb/pha accumulation regulator dna-binding domain protein | shim_16590 | Not Available | Positive | 1639935 - 1640483 | 20499.4 |
| putative pyridoxal phosphate-dependent aminotransferase epsn | shim_16600 | P39623 | Negative | 1640537 - 1641745 | 44045.5 |
| gamma-glutamylputrescine oxidoreductase | shim_16610 | Q9Z3S3 | Negative | 1641861 - 1643165 | 46723.8 |
| gamma-glutamylputrescine synthetase puua | shim_16620 | Not Available | Negative | 1643240 - 1644598 | 50296.4 |
| gmp synthase (glutamine-hydrolyzing) | shim_16630 | F4INN2 | Negative | 1644595 - 1645278 | 24920.1 |
| gamma-glutamylputrescine synthetase puua | shim_16640 | P78061 | Negative | 1645329 - 1646645 | 47726.1 |
| histidine transport system permease protein hism | shim_16650 | P45089 | Negative | 1646838 - 1647647 | 30766.7 |
| histidine transport system permease protein hisq | shim_16660 | P0A2J0 | Negative | 1647644 - 1648531 | 33218.9 |
| lysine-arginine-ornithine-binding periplasmic protein precursor | shim_16670 | P09551 | Negative | 1648634 - 1649356 | 25137.3 |
| octopine permease atp-binding protein p | shim_16680 | P35116 | Negative | 1649483 - 1650259 | 28271.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
