Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine--trna ligase | shim_16490 | Q1GFW2 | Negative | 1629572 - 1631521 | 73602.2 |
| homoserine o-acetyltransferase | shim_16500 | Q5E9H9 | Positive | 1631679 - 1632437 | 27680.1 |
| thermostable monoacylglycerol lipase | shim_16510 | Not Available | Positive | 1632437 - 1633417 | 34998.6 |
| glyoxalase-like domain protein | shim_16520 | Not Available | Positive | 1633428 - 1633871 | 15703.5 |
| pimeloyl-(acyl-carrier protein) methyl ester esterase | shim_16530 | Not Available | Positive | 1633934 - 1634644 | 26039.2 |
| hypothetical protein | shim_16540 | Not Available | Positive | 1634641 - 1634889 | 9364.96 |
| alkanal monooxygenase alpha chain | shim_16550 | P0ADV6 | Negative | 1634893 - 1635882 | 35732.8 |
| hypothetical protein | shim_16560 | Not Available | Negative | 1636013 - 1637293 | 47050.3 |
| poly-beta-hydroxybutyrate polymerase | shim_16570 | O66392 | Positive | 1637403 - 1639196 | 67333.7 |
| hypothetical protein | shim_16580 | Not Available | Positive | 1639339 - 1639782 | 15428.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
