Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidylate synthase | shim_16390 | Q168V8 | Positive | 1623127 - 1623960 | 31471.6 |
| dihydrofolate reductase | shim_16400 | Q9UWQ4 | Positive | 1623964 - 1624449 | 17712.2 |
| hypothetical protein | shim_16410 | Not Available | Positive | 1624560 - 1624862 | 10222.3 |
| putative cold shock protein a | shim_16420 | A0R5E1 | Negative | 1624905 - 1625111 | 7574.01 |
| putative reductase | shim_16430 | P44515 | Positive | 1625207 - 1625638 | 15687.8 |
| hypothetical protein | shim_16440 | Not Available | Positive | 1625684 - 1626052 | 12568.6 |
| hypothetical protein | shim_16450 | Not Available | Negative | 1626055 - 1626567 | 18553.1 |
| hypothetical protein | shim_16460 | Not Available | Negative | 1626600 - 1627352 | 26369.7 |
| hypothetical protein | shim_16470 | B9JEP8 | Negative | 1627349 - 1628206 | 31489.9 |
| hypothetical protein | shim_16480 | Not Available | Positive | 1628277 - 1629545 | 44870.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
