Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_16290 | Not Available | Negative | 1615534 - 1616178 | 24136.8 |
| multidrug resistance protein mdtk | shim_16300 | Q8UDF5 | Positive | 1616300 - 1617667 | 48471.8 |
| hypothetical protein | shim_16310 | Not Available | Positive | 1617958 - 1618503 | 19686.8 |
| hypothetical protein | shim_16320 | Not Available | Negative | 1618618 - 1619022 | 15464.5 |
| aspartate aminotransferase | shim_16330 | A3PMF8 | Negative | 1619042 - 1620247 | 43264.5 |
| transcriptional repressor dica | shim_16340 | Not Available | Positive | 1620332 - 1620739 | 14934.7 |
| flavinator of succinate dehydrogenase | shim_16350 | Not Available | Positive | 1620754 - 1621026 | 10541.6 |
| marr family protein | shim_16360 | P96440 | Positive | 1621115 - 1621612 | 19214.0 |
| hypothetical protein | shim_16370 | Not Available | Negative | 1621731 - 1622456 | 25491.4 |
| lactoylglutathione lyase | shim_16380 | P0A1Q3 | Negative | 1622453 - 1622881 | 16157.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
