Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| surf1 family protein | shim_16090 | A4IHH4 | Positive | 1597035 - 1597724 | 25686.1 |
| threonine synthase | shim_16100 | P29363 | Positive | 1597730 - 1599118 | 50218.5 |
| protease 3 precursor | shim_16110 | O86835 | Positive | 1599115 - 1600377 | 46061.7 |
| putative ribosomal n-acetyltransferase ydaf | shim_16120 | Not Available | Positive | 1600377 - 1600967 | 22485.9 |
| hypothetical protein | shim_16130 | Not Available | Positive | 1601104 - 1601916 | 30057.1 |
| putative fad-linked oxidoreductase | shim_16140 | P46681 | Positive | 1601950 - 1603353 | 49198.1 |
| adenine phosphoribosyltransferase | shim_16150 | Q1GE59 | Negative | 1603418 - 1603957 | 19581.9 |
| hypothetical protein | shim_16160 | Not Available | Negative | 1604038 - 1604154 | 4792.87 |
| hypothetical protein | shim_16170 | Not Available | Positive | 1604212 - 1604490 | 10727.7 |
| homoserine/homoserine lactone efflux protein | shim_16180 | Q9KVK7 | Negative | 1604498 - 1605127 | 21708.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
