Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative succinyl-coa:3-ketoacid coenzyme a transferase subunit a | shim_15990 | B0RVK4 | Negative | 1586260 - 1586979 | 25747.9 |
| putative l,d-transpeptidase erfk/srfk precursor | shim_16000 | P05448 | Negative | 1587078 - 1587647 | 20968.1 |
| dna topoisomerase 1 | shim_16010 | Q1RIM1 | Negative | 1587799 - 1590402 | 96742.3 |
| hypothetical protein | shim_16020 | Q8DPI7 | Negative | 1590583 - 1591731 | 40767.1 |
| protease tldd | shim_16030 | P0AGG9 | Negative | 1591876 - 1593297 | 49579.9 |
| cytochrome c oxidase subunit 2 precursor | shim_16040 | Q03736 | Positive | 1593481 - 1594329 | 31457.0 |
| protoheme ix farnesyltransferase | shim_16050 | Q5LNX8 | Positive | 1594410 - 1595348 | 33551.4 |
| hypothetical protein | shim_16060 | Not Available | Positive | 1595350 - 1595511 | 6198.52 |
| cytochrome c oxidase assembly protein ctag | shim_16070 | Q5LNX9 | Positive | 1595511 - 1596086 | 21444.5 |
| cytochrome c oxidase subunit 3 | shim_16080 | P06030 | Positive | 1596124 - 1596924 | 30129.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
