Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama-like transporter family protein | shim_15890 | Not Available | Positive | 1579116 - 1579940 | 28494.7 |
| nadh dehydrogenase | shim_15900 | Not Available | Positive | 1580132 - 1580518 | 14560.9 |
| putative phospholipid abc transporter-binding protein mlad | shim_15910 | Not Available | Positive | 1580523 - 1580969 | 15269.8 |
| hypothetical protein | shim_15920 | Not Available | Positive | 1580969 - 1581475 | 18005.2 |
| leucyl/phenylalanyl-trna--protein transferase | shim_15930 | Q5LUP4 | Negative | 1581433 - 1582056 | 23050.5 |
| biotin carboxylase | shim_15940 | P43873 | Negative | 1582076 - 1583428 | 48696.4 |
| biotin carboxyl carrier protein of acetyl-coa carboxylase | shim_15950 | Q5XAE6 | Negative | 1583438 - 1583932 | 16960.0 |
| tetrathionate response regulatory protein ttrr | shim_15960 | Not Available | Negative | 1584080 - 1584694 | 22943.6 |
| bacterial extracellular solute-binding protein, family 3 | shim_15970 | Not Available | Negative | 1584727 - 1585434 | 25176.1 |
| putative succinyl-coa:3-ketoacid coenzyme a transferase subunit b | shim_15980 | B0RVK3 | Negative | 1585628 - 1586257 | 22091.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
