Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein-releasing system transmembrane protein lole | shim_15790 | P57061 | Positive | 1570894 - 1572183 | 46713.3 |
| lipoprotein-releasing system atp-binding protein lold | shim_15800 | Q5LUD0 | Positive | 1572176 - 1572859 | 24044.1 |
| hypothetical protein | shim_15810 | Not Available | Negative | 1572881 - 1573291 | 14127.3 |
| 3-methyl-adenine dna glycosylase i | shim_15820 | Not Available | Negative | 1573373 - 1574035 | 24275.0 |
| hypothetical protein | shim_15830 | Not Available | Negative | 1574165 - 1574533 | 13833.4 |
| hypothetical protein | shim_15840 | Not Available | Positive | 1574722 - 1575531 | 31499.0 |
| atp-dependent clp protease proteolytic subunit | shim_15850 | Q1GGF6 | Positive | 1575775 - 1576407 | 23418.0 |
| atp-dependent clp protease atp-binding subunit clpx | shim_15860 | Q165G0 | Positive | 1576541 - 1577806 | 45709.8 |
| putative reductase | shim_15870 | Not Available | Negative | 1578121 - 1578453 | 12329.7 |
| putative aminoacrylate peracid reductase rutc | shim_15880 | Q9UZA3 | Positive | 1578665 - 1579048 | 13717.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
