Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_15690 | Not Available | Positive | 1559005 - 1559391 | 13768.6 |
| guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | shim_15700 | Q9X8H1 | Negative | 1559428 - 1560975 | 57931.1 |
| polyphosphate kinase | shim_15710 | B3Q9Q6 | Negative | 1561039 - 1563213 | 81379.5 |
| dnaa regulatory inactivator hda | shim_15720 | Not Available | Negative | 1563304 - 1563981 | 24044.0 |
| pheromone autoinducer 2 transporter | shim_15730 | Q9ZCT3 | Negative | 1563985 - 1565088 | 39134.9 |
| o-acetyltransferase oata | shim_15740 | Not Available | Negative | 1565222 - 1567246 | 74548.9 |
| proline--trna ligase | shim_15750 | Q1GFI1 | Positive | 1567446 - 1568798 | 50691.2 |
| hypothetical protein | shim_15760 | Not Available | Negative | 1568886 - 1569287 | 14995.3 |
| mercuric resistance operon regulatory protein | shim_15770 | P22853 | Positive | 1569366 - 1569716 | 12655.4 |
| penicillin-binding protein 4* | shim_15780 | Not Available | Positive | 1569786 - 1570784 | 35672.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
