Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_15590 | Not Available | Positive | 1550214 - 1550615 | 14118.0 |
| oxidoreductase ydhf | shim_15600 | P42972 | Positive | 1550612 - 1551541 | 33008.3 |
| hypothetical protein | shim_15610 | Not Available | Negative | 1551573 - 1552019 | 16798.3 |
| hypothetical protein | shim_15620 | Not Available | Positive | 1552113 - 1553102 | 36373.8 |
| methylmalonyl-coa mutase | shim_15630 | Q3J4D7 | Positive | 1553131 - 1555257 | 77104.8 |
| phage tail collar domain protein | shim_15640 | Not Available | Negative | 1555339 - 1555968 | 22063.9 |
| hypothetical protein | shim_15650 | Not Available | Positive | 1556165 - 1556773 | 21570.8 |
| n-acyltransferase ynca | shim_15660 | P76112 | Positive | 1556770 - 1557249 | 17136.7 |
| dnaj-like protein djla | shim_15670 | Q7AHS5 | Positive | 1557292 - 1557969 | 25017.9 |
| endonuclease/exonuclease/phosphatase family protein | shim_15680 | Not Available | Positive | 1557969 - 1558982 | 37777.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
