Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bicyclomycin resistance protein | shim_15490 | Not Available | Negative | 1542545 - 1543768 | 42930.2 |
| putative propionyl-coa carboxylase beta chain 5 | shim_15500 | Q3J4E3 | Positive | 1543946 - 1545478 | 56149.1 |
| cupin domain protein | shim_15510 | Not Available | Positive | 1545551 - 1545952 | 14852.4 |
| hypothetical protein | shim_15520 | Not Available | Positive | 1545949 - 1546302 | 12863.5 |
| hypothetical protein | shim_15530 | Not Available | Positive | 1546299 - 1546709 | 14964.7 |
| hypothetical protein | shim_15540 | Not Available | Positive | 1546912 - 1547058 | 5096.15 |
| hypothetical protein | shim_15550 | Not Available | Positive | 1547176 - 1547541 | 13825.2 |
| hypothetical protein | shim_15560 | Not Available | Positive | 1547563 - 1547841 | 10261.4 |
| hypothetical protein | shim_15570 | Not Available | Positive | 1547828 - 1548031 | 6304.66 |
| acetyl-/propionyl-coenzyme a carboxylase alpha chain | shim_15580 | Q5LUF3 | Positive | 1548187 - 1550214 | 73461.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
