Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_15390 | Not Available | Positive | 1532547 - 1533167 | 22988.6 |
| hypothetical protein | shim_15400 | Not Available | Positive | 1533468 - 1534181 | 26252.2 |
| enterobactin synthase subunit f | shim_15410 | Not Available | Negative | 1534072 - 1534335 | 9473.03 |
| putative acyl--coa ligase yhft | shim_15420 | Q71YZ5 | Negative | 1534322 - 1535785 | 52802.6 |
| hypothetical protein | shim_15430 | Not Available | Negative | 1535775 - 1536767 | 36397.4 |
| oxygen-dependent choline dehydrogenase | shim_15440 | Q8G1Z8 | Positive | 1537248 - 1538903 | 59735.7 |
| hypothetical protein | shim_15450 | Not Available | Negative | 1538900 - 1539685 | 28525.6 |
| hypothetical protein | shim_15460 | Not Available | Positive | 1539869 - 1540108 | 9156.86 |
| alpha/beta hydrolase family protein | shim_15470 | Q8ZN39 | Negative | 1540090 - 1540926 | 30031.2 |
| helix-turn-helix domain protein | shim_15480 | Q3J4E6 | Negative | 1540926 - 1542326 | 51643.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
