Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hth-type transcriptional regulator ydfh | shim_15290 | Not Available | Positive | 1521907 - 1522596 | 25471.5 |
| acetyltransferase (gnat) family protein | shim_15300 | Not Available | Positive | 1522593 - 1523429 | 29988.2 |
| dihydroxyacetone kinase | shim_15310 | P45510 | Negative | 1523716 - 1525344 | 55755.7 |
| maltose/maltodextrin import atp-binding protein malk | shim_15320 | Q1GID1 | Negative | 1525357 - 1526352 | 35814.9 |
| trehalose import atp-binding protein sugc | shim_15330 | Q9YGA6 | Negative | 1526345 - 1527442 | 40023.2 |
| hypothetical protein | shim_15340 | Not Available | Negative | 1527446 - 1527634 | 7022.1 |
| trehalose transport system permease protein sugb | shim_15350 | P55603 | Negative | 1527631 - 1528569 | 34405.4 |
| trehalose transport system permease protein suga | shim_15360 | Not Available | Negative | 1528566 - 1529513 | 35785.1 |
| bacterial extracellular solute-binding protein | shim_15370 | Not Available | Negative | 1529645 - 1530967 | 47971.6 |
| catabolite control protein a | shim_15380 | Not Available | Positive | 1531201 - 1532223 | 37477.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
