Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_15190 | Not Available | Negative | 1506688 - 1506999 | 10764.9 |
| hypothetical protein | shim_15200 | Not Available | Negative | 1507874 - 1508413 | 19662.8 |
| putative glycosyltransferase epse | shim_15210 | Q57022 | Negative | 1508815 - 1513503 | 176939.0 |
| hypothetical protein | shim_15220 | Not Available | Negative | 1513500 - 1515764 | 83742.0 |
| hypothetical protein | shim_15230 | Not Available | Negative | 1515861 - 1516610 | 27744.5 |
| asp/glu/hydantoin racemase | shim_15240 | Q6TMG4 | Negative | 1516917 - 1517603 | 24017.0 |
| inner membrane abc transporter permease protein ydcv | shim_15250 | P0AFK8 | Negative | 1517603 - 1518442 | 30568.7 |
| spermidine/putrescine transport system permease protein potb | shim_15260 | P0A2J8 | Negative | 1518444 - 1519301 | 31769.9 |
| hypothetical protein | shim_15270 | Not Available | Negative | 1519392 - 1520666 | 46574.4 |
| spermidine/putrescine import atp-binding protein pota | shim_15280 | A0LUE6 | Negative | 1520698 - 1521681 | 35462.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
