Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lactose transport system permease protein lacf | shim_15090 | O51924 | Positive | 1495395 - 1496363 | 36036.1 |
| l-arabinose transport system permease protein araq | shim_15100 | O31520 | Positive | 1496356 - 1497408 | 39563.8 |
| maltose/maltodextrin import atp-binding protein malk | shim_15110 | Not Available | Positive | 1497423 - 1498526 | 39644.7 |
| mannonate dehydratase | shim_15120 | Q8UAW0 | Positive | 1498523 - 1499734 | 44475.1 |
| hypothetical protein | shim_15130 | Not Available | Negative | 1499982 - 1500989 | 37609.8 |
| sensor protein qsec | shim_15140 | P40719 | Negative | 1500968 - 1502335 | 48821.6 |
| transcriptional regulatory protein tctd | shim_15150 | E1WA34 | Negative | 1502325 - 1502993 | 24861.7 |
| tripartite tricarboxylate transporter family receptor | shim_15160 | Not Available | Positive | 1503101 - 1504087 | 33989.3 |
| tripartite tricarboxylate transporter tctb family protein | shim_15170 | Not Available | Positive | 1504168 - 1504650 | 17962.8 |
| tripartite tricarboxylate transporter tcta family protein | shim_15180 | P70795 | Positive | 1504652 - 1506133 | 51348.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
