Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_14990 | Not Available | Negative | 1483463 - 1483708 | 8855.79 |
| choline-sulfatase | shim_15000 | O69787 | Positive | 1483776 - 1485311 | 57316.4 |
| acetolactate synthase large subunit | shim_15010 | P42463 | Negative | 1485413 - 1487116 | 61031.7 |
| polyol:nadp oxidoreductase | shim_15020 | P39160 | Negative | 1487244 - 1488551 | 46609.7 |
| uronate isomerase | shim_15030 | A5V7I1 | Negative | 1488560 - 1489957 | 52222.8 |
| putative hth-type transcriptional regulator ydfh | shim_15040 | P32425 | Negative | 1489954 - 1490691 | 26968.4 |
| inositol 2-dehydrogenase | shim_15050 | Not Available | Positive | 1490871 - 1491911 | 36472.7 |
| putative oxidoreductase yvaa | shim_15060 | Not Available | Positive | 1491908 - 1492927 | 37372.4 |
| glucose--fructose oxidoreductase precursor | shim_15070 | P74041 | Positive | 1492924 - 1493994 | 37941.8 |
| putative arabinose-binding protein precursor | shim_15080 | Not Available | Positive | 1494033 - 1495319 | 45563.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
