Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase large chain | shim_14890 | Q92PZ4 | Positive | 1466765 - 1470106 | 121197.0 |
| chaperone protein dnak | shim_14900 | Q0W874 | Positive | 1470457 - 1471701 | 44842.2 |
| sulfopropanediol 3-dehydrogenase | shim_14910 | Q5LUS2 | Negative | 1471717 - 1472994 | 45389.9 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_14920 | Not Available | Negative | 1473071 - 1475506 | 88940.5 |
| (r)-benzylsuccinyl-coa dehydrogenase | shim_14930 | Q5ZHT1 | Negative | 1475752 - 1476981 | 45631.9 |
| Trna-gln | Not Available | Not Available | Positive | 1477180 - 1477254 | Not Available |
| hemolysin, chromosomal | shim_14950 | Not Available | Positive | 1477599 - 1480019 | 82883.1 |
| type i secretion system atp-binding protein prsd | shim_14960 | P23596 | Positive | 1480031 - 1481161 | 39463.1 |
| type i secretion system atp-binding protein prsd | shim_14970 | Q83D84 | Positive | 1481137 - 1482105 | 34703.6 |
| type i secretion system membrane fusion protein prse | shim_14980 | Not Available | Positive | 1482195 - 1483514 | 48492.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
