Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| disulfide-bond oxidoreductase yghu | shim_01170 | Q46845 | Negative | 110809 - 111678 | 32614.2 |
| adenylate cyclase 1 | shim_01180 | Not Available | Negative | 111749 - 112834 | 39977.1 |
| 30s ribosomal protein s21 | shim_01190 | Not Available | Negative | 112978 - 113184 | 8113.09 |
| hypothetical protein | shim_01200 | O75208 | Positive | 113319 - 114011 | 25427.3 |
| phthiocerol synthesis polyketide synthase type i ppsc | shim_01210 | O74489 | Positive | 114112 - 115095 | 34525.7 |
| pyruvate dehydrogenase complex repressor | shim_01220 | Not Available | Negative | 115104 - 115871 | 28849.6 |
| hypothetical protein | shim_01230 | Not Available | Positive | 115980 - 116375 | 14009.8 |
| putative n-acetyltransferase ysne | shim_01240 | Not Available | Negative | 116372 - 116830 | 16851.8 |
| hypothetical protein | shim_01250 | Not Available | Positive | 116914 - 117264 | 12091.6 |
| putative cobalt transporter subunit (cbta) | shim_01260 | Not Available | Negative | 117342 - 118031 | 24124.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
