Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative nad(p)h nitroreductase ydja | shim_14790 | P0ACY2 | Positive | 1457553 - 1458131 | 20814.9 |
| cysz-like protein | shim_14800 | Not Available | Positive | 1458116 - 1458832 | 26103.6 |
| hypothetical protein | shim_14810 | Not Available | Negative | 1458783 - 1459082 | 10695.4 |
| glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein | shim_14820 | Q3IZP4 | Negative | 1459137 - 1459541 | 14369.2 |
| kdp operon transcriptional regulatory protein kdpe | shim_14830 | Not Available | Positive | 1459706 - 1460425 | 25647.6 |
| hypothetical protein | shim_14840 | P40586 | Negative | 1460432 - 1461160 | 27362.1 |
| hypothetical protein | shim_14850 | Not Available | Negative | 1461236 - 1462465 | 43884.6 |
| hypothetical protein | shim_14860 | Not Available | Negative | 1462489 - 1463883 | 51220.5 |
| hypothetical protein | shim_14870 | H9D1R1 | Negative | 1464002 - 1464463 | 16904.2 |
| aspartate--trna ligase | shim_14880 | Q5LUX6 | Negative | 1464466 - 1466322 | 69026.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
