Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospho-n-acetylmuramoyl-pentapeptide- transferase | shim_14590 | Q5LU74 | Negative | 1441703 - 1442785 | 39089.9 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | shim_14600 | Q9AKP1 | Negative | 1442786 - 1444228 | 50168.7 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | shim_14610 | Q89FU2 | Negative | 1444225 - 1445706 | 51466.3 |
| peptidoglycan synthase ftsi | shim_14620 | B8H0A0 | Negative | 1445725 - 1447509 | 64326.6 |
| hypothetical protein | shim_14630 | Not Available | Negative | 1447506 - 1447853 | 13328.8 |
| ribosomal rna small subunit methyltransferase h | shim_14640 | Q5LU79 | Negative | 1447853 - 1448839 | 35813.8 |
| protein mraz | shim_14650 | Q5LU80 | Negative | 1448842 - 1449342 | 18700.1 |
| nudix domain protein | shim_14660 | Not Available | Positive | 1450033 - 1450506 | 17885.1 |
| hypothetical protein | shim_14670 | Not Available | Positive | 1450580 - 1451044 | 16417.3 |
| c-factor | shim_14680 | Not Available | Positive | 1451075 - 1451719 | 22854.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
