Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_14490 | Not Available | Negative | 1432533 - 1432778 | 9484.21 |
| hypothetical protein | shim_14500 | Not Available | Negative | 1432775 - 1433032 | 9404.04 |
| putative amino acid permease yhdg | shim_14510 | Q9SHH0 | Negative | 1433029 - 1434234 | 41048.4 |
| udp-n-acetylmuramate--l-alanine ligase | shim_14520 | Q1GIV0 | Negative | 1434308 - 1435714 | 49814.4 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | shim_14530 | Q163J0 | Negative | 1435719 - 1436813 | 38155.5 |
| lipid ii flippase ftsw | shim_14540 | B8H092 | Negative | 1436810 - 1438162 | 48458.5 |
| hypothetical protein | shim_14550 | P37631 | Positive | 1438194 - 1439330 | 41142.8 |
| hypothetical protein | shim_14560 | Not Available | Negative | 1439336 - 1439653 | 11668.0 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | shim_14570 | Q5LU71 | Negative | 1439775 - 1441175 | 49246.4 |
| hypothetical protein | shim_14580 | Not Available | Positive | 1441301 - 1441660 | 13382.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
