Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voltage-gated clc-type chloride channel clcb | shim_14390 | B7NB42 | Negative | 1420416 - 1422104 | 59145.3 |
| dna repair protein recn | shim_14400 | Q87BS5 | Negative | 1422200 - 1423846 | 58868.9 |
| outer membrane protein assembly factor bamd precursor | shim_14410 | Q9A6U9 | Negative | 1423883 - 1424737 | 32441.1 |
| udp-3-o-(3-hydroxymyristoyl) n-acetylglucosamine deacetylase | shim_14420 | Q2W0G6 | Negative | 1424847 - 1425770 | 32970.5 |
| cell division protein ftsz | shim_14430 | O31314 | Negative | 1425977 - 1427644 | 58185.0 |
| cell division protein ftsa | shim_14440 | O30994 | Negative | 1427997 - 1429331 | 48062.5 |
| cell division protein ftsq | shim_14450 | F7ZDD2 | Negative | 1429333 - 1430202 | 32535.7 |
| d-alanine--d-alanine ligase b | shim_14460 | Q1GIU7 | Negative | 1430190 - 1431104 | 32676.4 |
| udp-n-acetylenolpyruvoylglucosamine reductase | shim_14470 | Q163J3 | Negative | 1431230 - 1432156 | 33061.3 |
| hypothetical protein | shim_14480 | Not Available | Negative | 1432225 - 1432533 | 11621.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
