Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent curcumin reductase | shim_14290 | P76113 | Positive | 1410143 - 1411183 | 36962.0 |
| hypothetical protein | shim_14300 | Not Available | Negative | 1411305 - 1412339 | 36996.3 |
| hca operon transcriptional activator | shim_14310 | P0A9G0 | Negative | 1412496 - 1413407 | 34072.1 |
| 5,10-methylenetetrahydrofolate reductase | shim_14320 | P45208 | Positive | 1413500 - 1414366 | 31425.9 |
| thioesterase superfamily protein | shim_14330 | Not Available | Positive | 1414436 - 1414933 | 17491.9 |
| xaa-pro dipeptidase | shim_14340 | Q6P1B1 | Positive | 1415148 - 1416956 | 65522.9 |
| hypothetical protein | shim_14350 | Not Available | Positive | 1417038 - 1417382 | 12654.7 |
| putative abc transporter atp-binding protein | shim_14360 | Q1QX72 | Positive | 1417431 - 1418117 | 24036.9 |
| ftsx-like permease family protein | shim_14370 | Not Available | Positive | 1418111 - 1419700 | 56135.0 |
| hypothetical protein | shim_14380 | Not Available | Positive | 1419737 - 1420384 | 23394.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
