Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| erythromycin 3''-o-methyltransferase | shim_14190 | Not Available | Negative | 1399684 - 1400424 | 27844.0 |
| putative bifunctional p-450/nadph-p450 reductase 2 | shim_14200 | Q2QYH7 | Negative | 1400432 - 1401733 | 47765.9 |
| hypothetical protein | shim_14210 | Not Available | Negative | 1401730 - 1402872 | 43251.5 |
| Trna-leu | Not Available | Not Available | Positive | 1403228 - 1403314 | Not Available |
| tetratricopeptide repeat protein | shim_14230 | Not Available | Negative | 1403381 - 1403929 | 20260.1 |
| leucine-responsive regulatory protein | shim_14240 | Q44333 | Negative | 1403966 - 1404439 | 17485.2 |
| bifunctional protein puta | shim_14250 | P10503 | Positive | 1404544 - 1407969 | 121742.0 |
| rhomboid protease aara | shim_14260 | Not Available | Positive | 1408001 - 1408747 | 27149.7 |
| putative glutathione-dependent formaldehyde-activating enzyme | shim_14270 | Q9CXS4 | Positive | 1408744 - 1409112 | 13472.9 |
| inositol-1-monophosphatase | shim_14280 | Q92M71 | Negative | 1409167 - 1409958 | 28625.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
