Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_13990 | Not Available | Negative | 1377995 - 1378342 | 12378.9 |
| sarcosine oxidase, gamma subunit family | shim_14000 | Not Available | Negative | 1378377 - 1378928 | 19056.1 |
| aminomethyltransferase | shim_14010 | O87386 | Negative | 1378921 - 1381851 | 104741.0 |
| sarcosine oxidase, delta subunit family | shim_14020 | O87387 | Negative | 1381848 - 1382120 | 10139.8 |
| sarcosine oxidase subunit beta | shim_14030 | O87388 | Negative | 1382132 - 1383388 | 45783.8 |
| hypothetical protein | shim_14040 | Not Available | Negative | 1383555 - 1384088 | 18328.7 |
| hypothetical protein | shim_14050 | Not Available | Negative | 1384463 - 1385056 | 20662.8 |
| glutamate dehydrogenase | shim_14060 | Q53199 | Negative | 1385060 - 1386490 | 52481.6 |
| von willebrand factor type a domain protein | shim_14070 | Not Available | Positive | 1386829 - 1388610 | 65787.9 |
| tade-like protein | shim_14080 | Not Available | Positive | 1388607 - 1389143 | 19884.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
