Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| riboflavin biosynthesis protein ribd | shim_13890 | P25539 | Negative | 1369001 - 1370098 | 38671.7 |
| transcriptional repressor nrdr | shim_13900 | Q169C7 | Negative | 1370101 - 1370568 | 18042.5 |
| transcriptional activator hlyu | shim_13910 | Not Available | Negative | 1370927 - 1371202 | 9995.92 |
| hypothetical protein | shim_13920 | P74125 | Negative | 1371189 - 1371635 | 16464.8 |
| hypothetical protein | shim_13930 | Not Available | Negative | 1371687 - 1372079 | 13843.5 |
| hypothetical protein | shim_13940 | Not Available | Negative | 1372150 - 1372530 | 13506.0 |
| hypothetical protein | shim_13950 | Not Available | Negative | 1372574 - 1372972 | 14204.7 |
| hypothetical protein | shim_13960 | Not Available | Negative | 1373209 - 1373700 | 18114.7 |
| rna polymerase sigma factor rpod | shim_13970 | D5AQI9 | Negative | 1373843 - 1375822 | 75063.4 |
| dna primase | shim_13980 | Q9I5W0 | Negative | 1375939 - 1377918 | 72669.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
