Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent fmn reductase | shim_13590 | Not Available | Negative | 1340765 - 1341199 | 15062.2 |
| membrane dipeptidase (peptidase family m19) | shim_13600 | P27509 | Positive | 1341366 - 1342538 | 42082.4 |
| glucose--fructose oxidoreductase precursor | shim_13610 | P49305 | Negative | 1342557 - 1343519 | 34776.5 |
| capsule polysaccharide biosynthesis protein | shim_13620 | Not Available | Negative | 1343533 - 1344507 | 37623.0 |
| rna polymerase sigma factor rpoh | shim_13630 | P0CAW9 | Negative | 1344587 - 1345483 | 33854.5 |
| ribosomal large subunit pseudouridine synthase d | shim_13640 | P50513 | Negative | 1345708 - 1346742 | 36727.3 |
| hypothetical protein | shim_13650 | Not Available | Positive | 1346786 - 1347034 | 8970.09 |
| adenylate cyclase 2 | shim_13660 | Not Available | Negative | 1347048 - 1348775 | 61864.6 |
| microbial collagenase precursor | shim_13670 | Q58863 | Negative | 1348775 - 1353685 | 171390.0 |
| fecr protein | shim_13680 | Not Available | Negative | 1353669 - 1356026 | 84500.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
