Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylglutaryl-coa lyase yngg | shim_13490 | Q29448 | Negative | 1329873 - 1330730 | 29805.7 |
| glutathione s-transferase | shim_13500 | Not Available | Negative | 1330733 - 1331398 | 24738.5 |
| acetyl-/propionyl-coenzyme a carboxylase alpha chain | shim_13510 | Q42523 | Negative | 1331398 - 1333350 | 69279.7 |
| hypothetical protein | shim_13520 | Not Available | Negative | 1333360 - 1333905 | 20233.7 |
| methylmalonyl-coa carboxyltransferase 12s subunit | shim_13530 | Q3ULD5 | Negative | 1333910 - 1335517 | 57190.2 |
| hypothetical protein | shim_13540 | Not Available | Negative | 1335534 - 1336010 | 17227.3 |
| hypothetical protein | shim_13550 | Not Available | Negative | 1336015 - 1336515 | 17811.9 |
| acyl-coa dehydrogenase | shim_13560 | P12007 | Negative | 1336594 - 1337757 | 42251.8 |
| ureidoglycolate lyase | shim_13570 | Q39BA7 | Negative | 1337923 - 1338753 | 29604.6 |
| oligoendopeptidase f, plasmid | shim_13580 | Not Available | Positive | 1338876 - 1340693 | 68282.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
