Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_13390 | Not Available | Negative | 1322340 - 1322567 | 8093.07 |
| 50s ribosomal protein l21 | shim_13400 | Not Available | Negative | 1322571 - 1323269 | 23753.4 |
| nadh-quinone oxidoreductase chain 2 | shim_13410 | P29914 | Negative | 1323302 - 1324501 | 43004.1 |
| hypothetical protein | shim_13420 | Not Available | Negative | 1324503 - 1324871 | 12664.6 |
| nadh-quinone oxidoreductase subunit d | shim_13430 | Q1GIN9 | Negative | 1324871 - 1326097 | 46276.7 |
| sulfotransferase domain protein | shim_13440 | Not Available | Negative | 1326094 - 1327050 | 35594.7 |
| nadh-quinone oxidoreductase chain 5 | shim_13450 | Q5LPR5 | Negative | 1327053 - 1327658 | 23611.0 |
| nadh-quinone oxidoreductase subunit b | shim_13460 | Q5LPR4 | Negative | 1327674 - 1328207 | 19542.7 |
| nad(p)h-quinone oxidoreductase subunit 3 | shim_13470 | P29919 | Negative | 1328198 - 1328563 | 13927.3 |
| putative enoyl-coa hydratase echa8 | shim_13480 | C5NN19 | Negative | 1329083 - 1329868 | 27303.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
